Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NCIFGHOL_106 | 33385 | 33579 | CspA | 4.73e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCIFGHOL_3 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_4 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_5 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_6 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_7 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_8 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_9 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_10 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_11 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_12 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_13 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_14 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_15 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_16 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_17 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_18 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_19 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_20 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_21 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_22 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_23 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_24 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_25 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_31 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_43 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_57 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_61 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_75 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_85 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_86 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_87 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_89 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_90 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_91 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_92 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_93 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_94 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_95 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_96 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_97 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_98 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_100 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_101 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_102 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_103 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_104 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_105 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_106 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_107 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_108 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_109 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_111 | 1.0 | 0.0 | 1.0 |
| NCIFGHOL_112 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_113 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_114 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_115 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_116 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_117 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_118 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_119 | 0.0 | 1.0 | 0.0 |
| NCIFGHOL_120 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCIFGHOL_21 | 48784 | 73776 | False | Siphoviridae | VOG0703, VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886 |
| NCIFGHOL_22 | 1549 | 23630 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565 |
| NCIFGHOL_118 | 3529 | 12541 | False | Siphoviridae | VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG3478, VOG0707, VOG8520, VOG8520, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)