Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDDDIGLA_4 | 101308 | 102012 | WalR | 2.23e-111 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EDDDIGLA_2 | 32169 | 33230 | repUS74 | 1064 / 1062 | 92.76 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDDDIGLA_1 | 1.0 | 0.0 | 1.0 |
| EDDDIGLA_2 | 1.0 | 0.0 | 1.0 |
| EDDDIGLA_3 | 1.0 | 0.0 | 1.0 |
| EDDDIGLA_4 | 0.0 | 1.0 | 0.0 |
| EDDDIGLA_5 | 1.0 | 0.0 | 1.0 |
| EDDDIGLA_6 | 1.0 | 0.0 | 1.0 |
| EDDDIGLA_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDDDIGLA_4 | 1778347 | 1812371 | False | Siphoviridae | VOG4605, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG3643, VOG0152, VOG9741, VOG0536, VOG9860, VOG11003, VOG8987, VOG1638, VOG6238, VOG4566, VOG0186, VOG1309 |
| EDDDIGLA_4 | 1901825 | 1910993 | False | Siphoviridae | VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632 |
| EDDDIGLA_4 | 2071489 | 2113443 | False | Siphoviridae | VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG0822, VOG4570, VOG0198, VOG1563, VOG0044, VOG5733, VOG3643, VOG0152, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG11003, VOG6238, VOG6237, VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552 |
| EDDDIGLA_4 | 2448208 | 2461820 | True | Siphoviridae | VOG5088, VOG4549, VOG4570, VOG4570, VOG5088, VOG0198, VOG5088, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799, VOG10867 |
Phigaro v2.4.0 (Database: Jan. 2024 release)